Aftershock: The Collateral Damage of USAID’s Exit from Kenya

The abrupt dissolution of USAID, catalyzed by the U.S. government’s sweeping “America First” foreign aid policy pivot, has left Kenya reeling from a vacuum of support once critical to its public health, agriculture, and economic systems. With over $2.5 billion in planned investments between 2020 and 2025, the agency was more than just a donor—it was woven into the fabric of Kenyan service delivery. The termination of 83% of USAID’s programs and the layoff of 94% of its staff effectively ended over six decades of robust U.S. development engagement. For Kenya, this rupture came without a viable transitional plan. Clinics shuttered, medicines vanished, and 40,000 jobs tied to health services evaporated. Programs such as PEPFAR, which had sustained over a million Kenyans on antiretroviral treatment, have been gutted, with HIV/AIDS funding slashed from $846M in 2023 to just $66M in 2025. Maternal health, malaria prevention, and reproductive health services now teeter at the edge of collapse, with service cuts exceeding 90% in some areas. Kenya’s health infrastructure, already strained, is now buckling under a loss that is not merely financial—but fatal.

The economic blowback extends far beyond healthcare. USAID had supported Kenya’s agriculture sector through subsidies, training, and innovation, all now dismantled. Smallholder farmers are especially vulnerable. With the termination of the Famine Early Warning Systems Network (FEWS NET) after four decades of operation, Kenya has lost its primary mechanism for forecasting and responding to food insecurity. Meanwhile, tax reforms in the proposed 2025 Finance Bill—removing VAT exemptions on farm inputs and raising fuel duties—compound the crisis, inflating production costs and shrinking rural margins. The convergence of aid withdrawal, policy shocks, and climate threats is deepening food insecurity and threatening to reverse years of agricultural gains. Simultaneously, the Kenyan startup ecosystem and governance reform sectors face a projected $100 million funding shortfall. Civil society actors, often powered by USAID support, now risk losing their watchdog capacity. In areas such as conflict prevention and refugee education, where USAID once acted as a stabilizing force, the vacuum could be exploited by extremist recruiters, echoing conflict patterns seen in past aid shock cases in West Africa.

Kenya’s response has been urgent but encumbered. The government has committed to repatriating its health data from U.S.-hosted systems and shifting toward local infrastructure, yet faces severe capacity shortfalls. The fiscal strain is formidable: a KSh 52 billion health budget hole and a broader KSh 66.9 billion gap across affected sectors. While the Bottom-Up Economic Transformation Agenda (BETA) reflects ambition for self-reliance through tax reforms and private investment, execution remains constrained by weak systems and widespread corruption. Still, civil society and policymakers are beginning to reframe the crisis as a wake-up call for domestic revenue mobilization and governance renewal. If there is a path forward, it lies in converting dependency into resilience—not just by replacing funding streams, but by rethinking national priorities, protecting human capital, and investing in sovereign, accountable systems that can withstand future geopolitical shocks.

References:

Citizen Digital Over 40,000 Kenyans jobless after USAID-funded health facilities shut down

The Voice of Africa USAID Shuts Down After 63 Years, Leaving Africa in Crisis

The Star Civil society calls for self-reliance as foreign aid dwindles

Africa.com Kenya to Reclaim Health Data After Trump Administration’s USAID Cuts

Jijuze Kenya Faces Crisis After USAID Funding Withdrawal

Capital Business USAID funding halt to hit Kenya’s economy, social sectors – report

Kenya Faces Crisis After USAID Funding Withdrawal

The abrupt cessation of funding from the United States Agency for International Development (USAID) has sent shockwaves through Kenya, marking a significant turning point in the country’s development trajectory. The decision by the US government to terminate approximately 83% of USAID’s global contracts has had an immediate and profound impact, with Kenya ranking as the seventh most affected nation worldwide, underscoring its heavy reliance on donor funding for crucial sectors. The sheer scale of the withdrawal, encompassing the cancellation of numerous projects across health, education, economic development, and governance, has left a void that will be challenging to fill. Organizations on the ground, such as CFK Africa, have reported widespread panic and uncertainty as essential healthcare services, particularly in the fight against HIV/AIDS and tuberculosis, face severe disruptions . The sudden halt has not only jeopardized the continuation of vital programs but has also resulted in significant job losses, with estimates suggesting that at least 35,000 Kenyans working in USAID-funded initiatives are now facing unemployment . This abrupt departure of a major development partner has ignited discussions about the long-term sustainability of Kenya’s development and the urgent need for alternative strategies.  

A Citizen Digital Report

The health sector in Kenya is bearing the brunt of the USAID funding freeze, with potentially devastating consequences for the progress made over the past two decades, particularly in combating the HIV/AIDS epidemic. While the US has allocated $66 million to HIV/AIDS programs in Kenya for 2025, this represents a significant decrease from the $846 million provided in 2023, signaling a concerning downward trend. The World Health Organization (WHO) had earlier warned that Kenya was among several countries at risk of running out of essential HIV drugs due to the aid pause, potentially undoing years of hard-won gains and leading to a resurgence of the disease. The termination has severely impacted the US President’s Emergency Plan for AIDS Relief (PEPFAR), which relies heavily on USAID’s logistical support, leading to an immediate halt in HIV treatment, testing, and prevention services across more than 50 countries. Reports from organizations like Médecins Sans Frontières (MSF) paint a grim picture of service shutdowns and treatment disruptions, leaving millions of vulnerable individuals without access to life-saving medications and care . The situation is further compounded by existing shortages of some HIV drugs within the country, creating a perfect storm that threatens to overwhelm the healthcare system .  

Beyond the immediate crisis in the health sector, the USAID funding cuts are expected to have far-reaching long-term repercussions across Kenya’s social and economic landscape . Programs supporting maternal and child health, tuberculosis and malaria control, water and sanitation, education, and economic development are all facing significant funding shortfalls . The termination of initiatives aimed at improving primary literacy, supporting smallholder farmers, and promoting trade and investment will hinder progress in these crucial areas . The Kenyan government now faces immense pressure to find alternative funding sources and implement sustainable development strategies to mitigate the impact of this significant withdrawal of aid . This necessitates a concerted effort to strengthen domestic resource mobilization, diversify international partnerships, engage the private sector, and foster local innovation to ensure the continued well-being and progress of the nation .

References:

The Star Kenya 7th most affected by US aid freeze

Aljazeera USAID’s demise raises fears for millions of lives across the Global South

Capital Business USAID funding halt to hit Kenya’s economy, social sectors – report

Nation USAID funding cuts disrupt vulnerable rural livelihoods in Turkana

Think Global Health Life After USAID: Africa’s Development, Education, and Health Care

Reliefweb CFK Africa Witnesses Devastating Effects in Kenya from End of U.S. Agency for International Development Support

Willow Health Media USAID Shut for Good: Millions at risk in Kenya, thousands jobless overnight